Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890868.1_cds_XP_016445569.1_40516
CDS Infomation

[gene=LOC107770750] [db_xref=GeneID:107770750] [protein=putative late blight resistance protein homolog R1B-16 isoform X2] [protein_id=XP_016445569.1] [location=complement(join(4607..5657,5915..6954))] [gbkey=CDS]
Sequence

ATGGTTGGTTTTAATGAAGAAACTGAAATGCTTATAGAGCAACTTGTGAGAGGACATCGA
CAATTAGATGTGATCTCAATATTTGGAATGCCAGGACTCGGAAAAACAACCTTGGCTAAG
AAATTGTATGATCATGAAACAATTTCCAATCGTTTCGATATTCGCTTGTGGTGTTGTTCT
TCTCAATCTTATAATAATAGAGTTCTCTTGTTTGAATTATTAGGTCATATTTGTGAGCTT
GATGATATTACTAAAGAAAAAAGTGATGATGAGTTAGCTGAGAAGCTTTATAGATATTTG
AAAGGAAAGAGATACCTTATTGTAGTGGATGATGTGTGGAGTCCTAATGCATGGGATGAT
ATAAAGAGACCGTTTCCCGATGATAATAAAGGAAGTCGAATTATTTTAACAACTAGACTT
GAATCAATCACCACGTATGCCATGATCAATTCGAGTCCTCATCATCTTCGCTTGTTCACA
GAAGAAGAAAGTTGGATGCTACTGAAGGAGAAGGTATTCAAAGAAGACAATTGTTATTGT
CCTCAACAACTCGAGGATATAGGTAAGCAAATAGCGACAAAGTGTGGAGGATTACCCCTT
GCAATTGTATTGGTAGCTGGTGTTCTTGCAAAAAATGATAAGGAAATAGTTCATTGGCAA
CAAGTAAGGGAACGTTTGAAGTTAAAAATGCAAGGTTGTATGGATATAGTTGAATCGAGT
TATCAACACTTACCCGTTCATTTGCAAAATTGTTTTCTCTATTTTGCTTCATTTCTAGAG
GGTAAAAAAGTTCCTGTTCAAAAATTGATACGACTATGGATCGCAGAAAATTTTGTTGAA
GCTAGTAGTACTACATTAAAGAGCTTAGAGATGGTTGCAATGGATTATTTGATGGATTTA
ATTAGGAGCAACCTAGTGATGGTGGCTAATATAAATTCCTCGGGGGAGCTCAAAGCTGTC
TATATTCATGATGTAATACATGAATTTAGCTTGAGGAAAGCTAAAGTTGGCAACTTTTTG
CTGAGGATAAATGACCAGCTTGTTTATATACTTCCATCTTCCAAAGGTCGCTCTGGACGC
ATATATATCTTAGCACCTTCTGGACGAAATATCAACACCTTACGATTCCTTCCCAGTGTA
AATTCTCCTTGGGTTGATTTAGATTTGGCTAAATCCTGGAAAAACCTGAGAGTATTAGAT
TTGAGTTCCGTAAAGCTGCATAAGACTCATGCAGATGCATTGAGATATCTGATTCATTTG
AAGTATTTGGAGCTGCAGTTGCCTTCTGATTACACTTCATATACAATATGCAACCTGAAG
GAGCTAGAGACATTTATAGCGACCGGAGTCTATCATAAATCCTGCATTCCAAATTCCATT
TGGGGTATGACAAGCTTGAGGCATCTGCATATAAGTACTCTATACACCTCTCAAATATTA
GAGGATCTTGACAACTTAAAAACATGTTCGAATTTGGTTATTGATGCTGGGGTGTATTAT
CAGAGTTTTATGAAAAGATTACCCAATCTTGAAAAGCTCAGTTGTCGATTATGTGGCTCA
GGAACCCGTTTTTACAAATACTTTCCTGCTTTCGGATCTCTTGGTCAACTCAAATCTCTC
AAGATCGATGTCACTAGGTTATTGACATATCCCTATGGTTTTGAAGACTTTACATATCCG
TCAAGCCTCAAGAAATTAACTTTGGCATATCTTGAGCTCCCTTGGAGTAAAATGTCCTAC
ATTGGTAGTTTGTCCAACCTTGAATTTCTTAAATTAGAAGGTAATGGTTTTAAAGGGAGG
TGGGACGTTAAGGACGGGGAGTTTTCTAACCTTAAAGTTTTGAAATTAAAGAAACTAGGA
CTCTCGGAATGGACTGCCTCTGATGACTCATATCCCAACCTACAGCGAGTACTGGTGCAC
GGGTGTTGGAAACTAGAGGAAATTCCTTATAGTTTTGGGAGTAGTTGCTCAATGCAACTT
ATTGAGGTAAGATCATGTTGTGACTCTGCGGTAAATGCTGCCCTCAAAATTAAAGAAACA
CAAATTGAGGAGATGGGGAATTCTGAATTCAAGGTTATTATTTGTAAGTAA

Peptide Sequence

PEP ID

XP_016445569.1
PEP Infomation

PREDICTED: putative late blight resistance protein homolog R1B-16 isoform X2 [Nicotiana tabacum]
Sequence

MVGFNEETEMLIEQLVRGHRQLDVISIFGMPGLGKTTLAKKLYDHETISNRFDIRLWCCS
SQSYNNRVLLFELLGHICELDDITKEKSDDELAEKLYRYLKGKRYLIVVDDVWSPNAWDD
IKRPFPDDNKGSRIILTTRLESITTYAMINSSPHHLRLFTEEESWMLLKEKVFKEDNCYC
PQQLEDIGKQIATKCGGLPLAIVLVAGVLAKNDKEIVHWQQVRERLKLKMQGCMDIVESS
YQHLPVHLQNCFLYFASFLEGKKVPVQKLIRLWIAENFVEASSTTLKSLEMVAMDYLMDL
IRSNLVMVANINSSGELKAVYIHDVIHEFSLRKAKVGNFLLRINDQLVYILPSSKGRSGR
IYILAPSGRNINTLRFLPSVNSPWVDLDLAKSWKNLRVLDLSSVKLHKTHADALRYLIHL
KYLELQLPSDYTSYTICNLKELETFIATGVYHKSCIPNSIWGMTSLRHLHISTLYTSQIL
EDLDNLKTCSNLVIDAGVYYQSFMKRLPNLEKLSCRLCGSGTRFYKYFPAFGSLGQLKSL
KIDVTRLLTYPYGFEDFTYPSSLKKLTLAYLELPWSKMSYIGSLSNLEFLKLEGNGFKGR
WDVKDGEFSNLKVLKLKKLGLSEWTASDDSYPNLQRVLVHGCWKLEEIPYSFGSSCSMQL
IEVRSCCDSAVNAALKIKETQIEEMGNSEFKVIICK

Transcript Sequence

Gene sequence data has not been registered.